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Merging upstream version 4.1.0.

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Signed-off-by: Daniel Baumann <daniel@debian.org>
This commit is contained in:
Daniel Baumann 2025-02-09 21:52:21 +01:00
parent 43620d628e
commit 8e2d7f3f0f
Signed by: daniel
GPG key ID: FBB4F0E80A80222F
14 changed files with 374 additions and 21 deletions
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48
pre_commit/languages/r.py
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@ -15,27 +15,50 @@ from pre_commit.envcontext import PatchesT
from pre_commit.envcontext import UNSET
from pre_commit.prefix import Prefix
from pre_commit.util import cmd_output
from pre_commit.util import cmd_output_b
from pre_commit.util import win_exe
ENVIRONMENT_DIR = 'renv'
RSCRIPT_OPTS = ('--no-save', '--no-restore', '--no-site-file', '--no-environ')
get_default_version = lang_base.basic_get_default_version
_RENV_ACTIVATED_OPTS = (
'--no-save', '--no-restore', '--no-site-file', '--no-environ',
)
def _execute_vanilla_r_code_as_script(
def _execute_r(
code: str, *,
prefix: Prefix, version: str, args: Sequence[str] = (), cwd: str,
cli_opts: Sequence[str],
) -> str:
with in_env(prefix, version), _r_code_in_tempfile(code) as f:
_, out, _ = cmd_output(
_rscript_exec(), *RSCRIPT_OPTS, f, *args, cwd=cwd,
_rscript_exec(), *cli_opts, f, *args, cwd=cwd,
)
return out.rstrip('\n')
def _execute_r_in_renv(
code: str, *,
prefix: Prefix, version: str, args: Sequence[str] = (), cwd: str,
) -> str:
return _execute_r(
code=code, prefix=prefix, version=version, args=args, cwd=cwd,
cli_opts=_RENV_ACTIVATED_OPTS,
)
def _execute_vanilla_r(
code: str, *,
prefix: Prefix, version: str, args: Sequence[str] = (), cwd: str,
) -> str:
return _execute_r(
code=code, prefix=prefix, version=version, args=args, cwd=cwd,
cli_opts=('--vanilla',),
)
def _read_installed_version(envdir: str, prefix: Prefix, version: str) -> str:
return _execute_vanilla_r_code_as_script(
return _execute_r_in_renv(
'cat(renv::settings$r.version())',
prefix=prefix, version=version,
cwd=envdir,
@ -43,7 +66,7 @@ def _read_installed_version(envdir: str, prefix: Prefix, version: str) -> str:
def _read_executable_version(envdir: str, prefix: Prefix, version: str) -> str:
return _execute_vanilla_r_code_as_script(
return _execute_r_in_renv(
'cat(as.character(getRversion()))',
prefix=prefix, version=version,
cwd=envdir,
@ -53,7 +76,7 @@ def _read_executable_version(envdir: str, prefix: Prefix, version: str) -> str:
def _write_current_r_version(
envdir: str, prefix: Prefix, version: str,
) -> None:
_execute_vanilla_r_code_as_script(
_execute_r_in_renv(
'renv::settings$r.version(as.character(getRversion()))',
prefix=prefix, version=version,
cwd=envdir,
@ -161,7 +184,7 @@ def _cmd_from_hook(
_entry_validate(cmd)
cmd_part = _prefix_if_file_entry(cmd, prefix, is_local=is_local)
return (cmd[0], *RSCRIPT_OPTS, *cmd_part, *args)
return (cmd[0], *_RENV_ACTIVATED_OPTS, *cmd_part, *args)
def install_environment(
@ -204,14 +227,15 @@ def install_environment(
renv::install(prefix_dir)
}}
"""
with _r_code_in_tempfile(r_code_inst_environment) as f:
cmd_output_b(_rscript_exec(), '--vanilla', f, cwd=env_dir)
_execute_vanilla_r(
r_code_inst_environment,
prefix=prefix, version=version, cwd=env_dir,
)
_write_current_r_version(envdir=env_dir, prefix=prefix, version=version)
if additional_dependencies:
r_code_inst_add = 'renv::install(commandArgs(trailingOnly = TRUE))'
_execute_vanilla_r_code_as_script(
_execute_r_in_renv(
code=r_code_inst_add, prefix=prefix, version=version,
args=additional_dependencies,
cwd=env_dir,